rs30347490 SNP Detail

Summary

• ID
  rs30347490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152655739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTGATAC CACTCAGGCC
  TCTGCCAGCA AGACAAACAT GCATGTTTTT CCACTCAAGT GAGACACGAG AGCAAACAAG
  CCAAGGTAGA CAACAGGCCA AAAATAAGAA CCTGAGAGAA ATTTAGCAGG TGTGGAAGCA
  TTTCTAAAAG GAAATGGCGA GTGGCAAGTA ATACTAAGTG CAGAGATAAA ACCCGCTATG
  R
  TTAAAGAGTT GATAAAGGGT TACTGTGTGC ACGGAAAGAA ACAGAGCCAT CCAGGTGTCC
  TGAAGTTGGG CTAACATGAC AGAAACATCT CATAAGGAAC TAACAGAAAT GCTGGCAGAG
  GGCTAAATTC AAGTCAACTA GTGGCTGATA ATCCACACAA AGACAGAACA CATACACAGC
  GCTTGGGTGA TTCTGGAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45419193	mCV24026823	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss136105110	ENSMUSSNP2726625	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss321029340	CHEV_3_152613066	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30347490					SNP	G	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152655739 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587634	regulatory region 587634	248 bp proximal
Rr587635	regulatory region 587635	1003 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron