rs30343665 SNP Detail

Summary

• ID
  rs30343665
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:50667462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGAAAGT GCCCCGAATT
  GTAACTGTGT CTCGAGATAG GAAGATCAAT GAAGTTCAGG ACTGTTTCAG ATTTCCTAGA
  CTCTGATTGG ACAGTTTATG CTAGCCTTAA ACCTGGACAA ACAGCTCTAG ACTTAGCTAT
  CTGCATATTT ACAGTGTTGG AGATGAACTC GGGGCCTTTC ACCACTAGAC TGTATCCCCA
  K
  CTCCGGATAT CTCTTTTTAT CTTAGGGCCT TTTGATCTAA CCCAAGGGAG AGGGATGTCT
  GAACTTGGGG CAAATGGTGG TATTTCCTGT TCTTATTTCT CTGCTTTGTC CTTTATTCTC
  TTGGATTAGG ACGAACATGG CTTCATCTCC AGGGAGTTCC ACAGGAAGTA CCGGATCCCA
  GCCGATGTGG ATCCTCTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46398868	mCV24348877	ABI	CRAMUS_MOUSE	f	SNP		T	G					G		G
ss47708374	NES11321528	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G	G	T	G	G	G	G
ss136480951	ENSMUSSNP6454510	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30343665					SNP	T	T	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47708374	NES11321528	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50667462 () rs orientation: forward

Symbol	Name	Function Class
Cryab	crystallin, alpha B	Intron
Gm67659	predicted gene, 67659	93 bp downstream
Gm67675	predicted gene, 67675	353 bp downstream
Rr678730	regulatory region 678730	1714 bp distal
Tssr85064	transcription start site region 85064	1940 bp downstream
Tssr85065	transcription start site region 85065	1922 bp downstream
Tssr85066	transcription start site region 85066	1874 bp downstream
Tssr85067	transcription start site region 85067	1834 bp downstream
Tssr85068	transcription start site region 85068	264 bp upstream
Tssr89511	transcription start site region 89511	290 bp downstream
Tssr89512	transcription start site region 89512	466 bp downstream