rs30340622 SNP Detail

Summary

• ID
  rs30340622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53102532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGAAAGT TCATATTTTA
  TTTTTGGCAA TAAACAATGG TCAGGCCTGT GCTCACCACA GAGAAAGTGT TTATCAAATA
  CTCAGGTCTG AACAATATCA CACTGATTCT TGTTGTTCAA GTAAAATGAT ATTTTGGGGG
  GGGAGGGAGG AAAGACAGAC AGAAAGAAAG CAAAAAGATA GCAAAAGCAA GCCCATGTCC
  Y
  GGCTGCCTCA TCCGAAAGGG GAGACTATGA AGTTTCTGTT TGGTCAGAAC GTTTAAAGTG
  TGCACGTTTC AGGGTTGACA CTGATAGGTA TGGTTTTAGT TTGTCTCATG AAGGGTTTTT
  TTTTTTTTTT TTTTTTTTTT TAAGAGACAC TGGCATTTCC TTTGGTTCTT TGGGCATGAA
  GAGAGAATGT CACGTGCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46938717	NES10808341	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C	C	T		T	T	T	C		C
ss320766881	CHEV_3_52999033	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30340622					SNP	C	C	T	C	T	C	C	C	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46938717	NES10808341	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53102532 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576654	regulatory region 576654			504 bp proximal