rs30340481 SNP Detail

Summary

• ID
  rs30340481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:67042112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAGGCCC AAAAATCTAG
  TCTATAACTC TTGCAGTTTT TCTTCCAGAA GCACGGGCTA CATTTTTTGG TCCCCTTTGC
  TCACCACTTG AGAGAACCCA GTCCCAGAAC TACTACTCTC TGTGGAGGCA GAATGCTCAA
  CAGAAGAGCT GGAAGGCAGT ACCCAGCAAC AGCCATCACA TGTAATGTGT CCACCTGCAC
  Y
  GAGCTCGTGT GTGCACTGTG TGCACTGTGT GTATCTGTGT TGGGGCAGGG CCCAGGGCTC
  TTCTCCATGC TAGGAGTGTT CTACCACTCA GCTACGTGCC AGATCTCTCC TGCTCTTTAC
  CTTGAAAACG GGTCTCACTA AGTTGCCTAG GTTGGCCTTG AACTTGTGAT CCTCCTGCCT
  CTCTCCCCAG GAGATGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47438786	NES11025302	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30340481					SNP	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438786	NES11025302	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67042112 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	mRNA-UTR
Rr412496	regulatory region 412496	1898 bp distal
Rr412497	regulatory region 412497	384 bp distal
Rr412498	regulatory region 412498	762 bp proximal