rs30340479 SNP Detail

Summary

• ID
  rs30340479
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:67042030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTGCTGC TAGATAGGGC
  CTGTGTGGCT CATGAAGTGG GATTTCTAGT TCAGACAGAA ACTAGGAATT TAAAAAAATG
  ACATTTAGGC CCAAAAATCT AGTCTATAAC TCTTGCAGTT TTTCTTCCAG AAGCACGGGC
  TACATTTTTT GGTCCCCTTT GCTCACCACT TGAGAGAACC CAGTCCCAGA ACTACTACTC
  W
  CTGTGGAGGC AGAATGCTCA ACAGAAGAGC TGGAAGGCAG TACCCAGCAA CAGCCATCAC
  ATGTAATGTG TCCACCTGCA CTGAGCTCGT GTGTGCACTG TGTGCACTGT GTGTATCTGT
  GTTGGGGCAG GGCCCAGGGC TCTTCTCCAT GCTAGGAGTG TTCTACCACT CAGCTACGTG
  CCAGATCTCT CCTGCTCTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47438783	NES11025300	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30340479					SNP	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438783	NES11025300	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67042030 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	mRNA-UTR
Rr412496	regulatory region 412496	1816 bp distal
Rr412497	regulatory region 412497	302 bp distal
Rr412498	regulatory region 412498	844 bp proximal