rs30340266 SNP Detail

Summary

• ID
  rs30340266
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67039296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGCCTGA TATACAGACT
  TGACACATGC ATACTGCCAT TTCACTTAAA AGAGAGAAAA ACACTCATCC CCTCCTTGCT
  GTTACAATTA TTCGATCAAC AGAGGAAAGG AAGGAAGGCC ATGTAAATAT ATGTAGCTCC
  TGGTATCACT GGGGCACTTC TCATGCGCTG GCTTACCACG TCACAAGAGA TTGATGCCAT
  Y
  TCCTGGGTGA CTGGGCAGAC TTCCTTCCCC ATAATTATAC CTTACTCAGT GACCTCACTT
  CTAAGCCCCT GTGAGAACTG TGAGCAGGGA GAATTCCTAG AACCAGGCTG TTGGTCAATG
  ACCACATGGT AGACTCTGAT AAACATGAGA GGTGATGCAT TGCATGATTT GAAACCTTGA
  AGATTCTTCT AAATCTACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47438681	NES11025257	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30340266					SNP	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438681	NES11025257	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67039296 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	380 bp downstream
Rr412496	regulatory region 412496	362 bp proximal