rs30339787 SNP Detail

Summary

• ID
  rs30339787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53101455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCTTATA AAGTCAGTTC
  TCTCCTTCCA TCGATACAGC GATTCTGTGG ATCAATTGCA GGCCACCAGG CTTGTGTGGC
  AAACACTTTT GCCCACTTAG CCATCTTGCT GTGCCACTGC CTCCTCTTTT TGATACATTT
  GTAAGATAGC ACTATCTTCG TGTCTGTATT GATATGAGAC AAAGGCTGTA TGCACTGTGT
  Y
  CACTTCCCTA CCTCTGTGTG CATACCCTCC TGTTAGAAAT CCCCGCACCA CGCCCTCAAG
  TCACTGTCTG TGTCCATTCG TCTAGGCTTG TACTCATATA GCTACTTAAA TATTGCTCTG
  GATGTTTCGG TAAAGGTAGG TTCCCACAAA ATTAACACTT TGAATTGATC TGCGTATAAC
  TGACTGACTA ACCGACCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46938702	NES10808420	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30339787					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46938702	NES10808420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53101455 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576654	regulatory region 576654			1581 bp proximal