rs30339595 SNP Detail

Summary

• ID
  rs30339595
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:67041415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGC AAACCGCCAT TTGTTACACG
  M
  ATGAAGGCAG TCACATCCCA TTCCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47438765	NES11025288	PERLEGEN	MM_PANEL2	f	SNP		A	C	C		C	C	C		A
ss144529254	ENSMUSSNP6244150	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319760343	CHEV_1_67048830	CHEVERUD	SCREENING_POP	f	SNP					A				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30339595					SNP	A	A	C	C	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438765	NES11025288	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67041415 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	mRNA-UTR
Rr412496	regulatory region 412496	1201 bp distal
Rr412497	regulatory region 412497	within coordinates
Rr412498	regulatory region 412498	1459 bp proximal