rs30339523 SNP Detail

Summary

• ID
  rs30339523
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67039168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTAAAGGT TGTTTGTTAT
  TATTATTATT ACTGCAGTGA CAATTGCGTA TTTTCATTCT GCTGGCGAGA AGTGAAGACA
  GTACAGGGTT GCTATGGAGT TACTGGAGAG TTTTGTCCCT CCATATCTGT CTGCCTGATA
  TACAGACTTG ACACATGCAT ACTGCCATTT CACTTAAAAG AGAGAAAAAC ACTCATCCCC
  K
  CCTTGCTGTT ACAATTATTC GATCAACAGA GGAAAGGAAG GAAGGCCATG TAAATATATG
  TAGCTCCTGG TATCACTGGG GCACTTCTCA TGCGCTGGCT TACCACGTCA CAAGAGATTG
  ATGCCATCTC CTGGGTGACT GGGCAGACTT CCTTCCCCAT AATTATACCT TACTCAGTGA
  CCTCACTTCT AAGCCCCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47438678	NES11025256	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30339523					SNP	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438678	NES11025256	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67039168 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	508 bp downstream
Rr412496	regulatory region 412496	490 bp proximal