rs30339520 SNP Detail

Summary

• ID
  rs30339520
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67039153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGAGCC AAATTACTTA
  AAGGTTGTTT GTTATTATTA TTATTACTGC AGTGACAATT GCGTATTTTC ATTCTGCTGG
  CGAGAAGTGA AGACAGTACA GGGTTGCTAT GGAGTTACTG GAGAGTTTTG TCCCTCCATA
  TCTGTCTGCC TGATATACAG ACTTGACACA TGCATACTGC CATTTCACTT AAAAGAGAGA
  W
  AAACACTCAT CCCCTCCTTG CTGTTACAAT TATTCGATCA ACAGAGGAAA GGAAGGAAGG
  CCATGTAAAT ATATGTAGCT CCTGGTATCA CTGGGGCACT TCTCATGCGC TGGCTTACCA
  CGTCACAAGA GATTGATGCC ATCTCCTGGG TGACTGGGCA GACTTCCTTC CCCATAATTA
  TACCTTACTC AGTGACCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47438675	NES11025255	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30339520					SNP	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438675	NES11025255	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67039153 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	523 bp downstream
Rr412496	regulatory region 412496	505 bp proximal