rs30338699 SNP Detail

Summary

• ID
  rs30338699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:67041294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCTGTTGT TTTAAAGCTG GAAAATGTTA CCACGTAGGT
  TAGAGTCTGG TTAGGCCTTT GATATCGAGG AAAGAAGGGA GGAGCTAAAG AGTCAATAGG
  Y
  GTTTGTTCAG AGGTCGAAAC ACGGGGGAGT CTTCGTGTAC AAACAAACCT GACTCCGAGG
  TGGTCTCGGA ATGTGAAGGA CACTTGCTCT TGGGATATGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47438759	NES11025286	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30338699					SNP	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438759	NES11025286	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67041294 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	mRNA-UTR
Rr412496	regulatory region 412496	1080 bp distal
Rr412497	regulatory region 412497	114 bp proximal
Rr412498	regulatory region 412498	1580 bp proximal