rs30337870 SNP Detail

Summary

• ID
  rs30337870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:67041002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATAAGCCA TTTAACTAAA
  CAAAGTGGGC TTTCTTTTCT AAAGCTGGAC ACCCAGCCAA ACAGCTGCAC TTTACTGTCT
  AAGAGTGACT TATAAATATT GATACAAAGC CTTCACCTGG CACAGTCTAC ACACAACTTC
  TGAGGATGCA CAGGGGTCAC AGAAGGACCA ATTCAATCCT AGAAATCGAG TGCTGGGCTG
  Y
  TCTTTGGATC CTACTGTAGG CACCCTTAAA AGGGCCAGAA AATTTCACGT AATATTAGCT
  ATCTTGGTAC CAAATAGAAA ATAACAGGAG ATTACTCCTC ATAGCAACCA GGATACACTC
  CATGGGGATT TGATCTCCAA TAAAAACTGA ATGACCAAAA GAGCCACAAA TAGCACATTA
  AATATTCTTA GACCCTGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47438750	NES11025283	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30337870					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438750	NES11025283	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67041002 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	mRNA-UTR
Rr412496	regulatory region 412496	788 bp distal
Rr412497	regulatory region 412497	406 bp proximal
Rr412498	regulatory region 412498	1872 bp proximal