rs30337620 SNP Detail

Summary

• ID
  rs30337620
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70439815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAAATAG TTTAGTATAA
  TAGCACACAT GCTTCAGGGC CAGATGGTCA AGGGTGTGGA TCCCAATGCA ACCTTATCTA
  CTCCGAGCAT CTCTGAGACT GGATCCTCAC TGGGAAGATG CCCATAACGG ACCCTGATTT
  GCTTGGATGT GGCTGGTTTC AATGGGGGAT AGGCTTGTGA AATGTCTGCC CAGGATTGTC
  M
  AGTGTTCAAT AATTCCTTGC TAAGTGACTG AGGTCCTTTG CACAATGCCT GACTCAGTGG
  AATGAATGCT CAGGAAAGGA TGCCATTCCT CAAAGGGCTG GATTATACGG AAGAGTCCCC
  AGGAGCTCAG GGACCTTAGG GTCCACCCAG ATGGCAGCCA GGCTCTTAAG CTGCATCTCC
  AATGCCCTTT TGGGTTGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39175183	mCV24337836	ABI	CRAMUS_MOUSE	f	SNP		A	C					C		C
ss51532228	NES14630559	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C		A	C	C	A	A	C	C	C	C
ss139681774	ENSMUSSNP3750674	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30337620					SNP	A	A	C	C	C	C	C	C	A	C	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51532228	NES14630559	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70439815 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm26908	predicted gene, 26908			1053 bp upstream
Rr494880	regulatory region 494880			1743 bp proximal
Sorbs3	sorbin and SH3 domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			1028 bp upstream
Tssr129550	transcription start site region 129550			1042 bp downstream
Tssr129551	transcription start site region 129551			1089 bp downstream
Tssr129552	transcription start site region 129552			1101 bp downstream