rs30337401 SNP Detail

Summary

• ID
  rs30337401
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67038666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCG TGAAGCCAGC GTGCTCACCG
  K
  TGCTAAGAAA GTCGGCGTTC TGCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47438654	NES11025248	PERLEGEN	MM_PANEL2	f	SNP		T	T	G	G			G	G	G		T
ss144529068	ENSMUSSNP2092892	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T				T
ss319760307	CHEV_1_67046081	CHEVERUD	SCREENING_POP	f	SNP							T				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30337401					SNP	T	T	T	G	G	T	T	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438654	NES11025248	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67038666 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	1010 bp downstream
Rr412496	regulatory region 412496	992 bp proximal