rs30337394 SNP Detail

Summary

• ID
  rs30337394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67038606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGT CCCCAAGGAT GCATTACCAG
  R
  CTCCTAGAAA ACTGCTTATC AGTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss47438645	NES11025245	PERLEGEN	MM_PANEL2	f	SNP		G	G	A	A			A	A	A
ss144529061	ENSMUSSNP3329801	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G				G
ss319760305	CHEV_1_67046021	CHEVERUD	SCREENING_POP	f	SNP							G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30337394					SNP	G	G	G	A	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438645	NES11025245	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67038606 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	1070 bp downstream
Rr412496	regulatory region 412496	1052 bp proximal