rs30336571 SNP Detail

Summary

• ID
  rs30336571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67038568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTGTAGA GTGACAGAAC
  ATTAGCTGCA GACTTAATGT CACCATGGTT GTAATTTGCA TGTTGATAGA AAGTTAACAT
  GTCGTATAGA TCGGAAATGA TGCTGGCTGA CTAGGAGGAG TGGCCCTGCT AAGATCCATT
  TCTCTATCCT CATTAGCCCA TGGTTTGGCT AACTGTGTTT GTGCTTTCTC TCATTACTAA
  R
  GAAATTGTAA AATATGTCCC CAAGGATGCA TTACCAGACT CCTAGAAAAC TGCTTATCAG
  TTTGCAGAAC AGAACCGTGA AGCCAGCGTG CTCACCGGTG CTAAGAAAGT CGGCGTTCTG
  CTTTGGAAGA AGCCTCTGAC CAAGGCTTTG GGAAAGAGAG CACGTGGATT CGAATGAGAA
  CGAAACGGCA AATTTTCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47438642	NES11025244	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30336571					SNP	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438642	NES11025244	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67038568 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	1108 bp downstream
Rr412496	regulatory region 412496	1090 bp proximal