rs30335750 SNP Detail

Summary

• ID
  rs30335750
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67038158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCATGTAGA ACTTACCTTG CACACACACA
  GACAAGTCAG GCACAAGCAA GAGATAAAGT CTGAGCACTG CTCACAGCAA CCACTAGAAT
  GGGCATGTCT ACAGCATATA ACCACTAGCA CCAGCAGTGT AAAAAGTATC TGCATGGGTG
  Y
  GTGTCAATTG CTAAACGCCA GTCCCTGAGA ATCAGCCAGC ATTAGCTATA CGCTAACAGC
  AAGTCCCCAT CAGCACTTTC AGATTGCAAA TGCTTTCCTT TGGAGCCAGG TCTGCCAGAG
  AAATTAGGCA ATTTTGACAG TGATTAATCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45119940	mCV23035882	ABI	CRAMUS_MOUSE	f	SNP	C				T
ss47438630	NES11025240	PERLEGEN	MM_PANEL2	f	SNP		C	C	C			C	C	T		C
ss144529044	ENSMUSSNP2649489	ENSEMBL	ENSEMBL_Sanger	f	SNP	C				T
ss319760301	CHEV_1_67045573	CHEVERUD	SCREENING_POP	f	SNP						C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30335750					SNP	C	C	C	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438630	NES11025240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67038158 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	1518 bp downstream
Rr412495	regulatory region 412495	1716 bp distal
Rr412496	regulatory region 412496	1500 bp proximal