rs30335747 SNP Detail

Summary

• ID
  rs30335747
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67038153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTAATTC CCTGTGTTCT
  TTAGACTGAG TTGCCAGAGC CAAGGGCCTG CTTTGTGCAT GTAGAACTTA CCTTGCACAC
  ACACAGACAA GTCAGGCACA AGCAAGAGAT AAAGTCTGAG CACTGCTCAC AGCAACCACT
  AGAATGGGCA TGTCTACAGC ATATAACCAC TAGCACCAGC AGTGTAAAAA GTATCTGCAT
  K
  GGTGCGTGTC AATTGCTAAA CGCCAGTCCC TGAGAATCAG CCAGCATTAG CTATACGCTA
  ACAGCAAGTC CCCATCAGCA CTTTCAGATT GCAAATGCTT TCCTTTGGAG CCAGGTCTGC
  CAGAGAAATT AGGCAATTTT GACAGTGATT AATCAGAAGT TCCCCCTTGC CCTCTATAAC
  CACTAAATGC CACACAAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47438627	NES11025239	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30335747					SNP	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438627	NES11025239	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67038153 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	1523 bp downstream
Rr412495	regulatory region 412495	1711 bp distal
Rr412496	regulatory region 412496	1505 bp proximal