rs30335744 SNP Detail

Summary

• ID
  rs30335744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67038128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAGAAGG CATTTTGTCA
  TTGCTTGGCT AATTCCCTGT GTTCTTTAGA CTGAGTTGCC AGAGCCAAGG GCCTGCTTTG
  TGCATGTAGA ACTTACCTTG CACACACACA GACAAGTCAG GCACAAGCAA GAGATAAAGT
  CTGAGCACTG CTCACAGCAA CCACTAGAAT GGGCATGTCT ACAGCATATA ACCACTAGCA
  Y
  CAGCAGTGTA AAAAGTATCT GCATGGGTGC GTGTCAATTG CTAAACGCCA GTCCCTGAGA
  ATCAGCCAGC ATTAGCTATA CGCTAACAGC AAGTCCCCAT CAGCACTTTC AGATTGCAAA
  TGCTTTCCTT TGGAGCCAGG TCTGCCAGAG AAATTAGGCA ATTTTGACAG TGATTAATCA
  GAAGTTCCCC CTTGCCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss47438624	NES11025238	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs30335744					SNP	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47438624	NES11025238	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67038128 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	1548 bp downstream
Rr412495	regulatory region 412495	1686 bp distal
Rr412496	regulatory region 412496	1530 bp proximal