rs30330046 SNP Detail

Summary

• ID
  rs30330046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52992475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGGCAGG GTCCATGTCC
  AGACTGTTTT GTGCCCGTTC TGTCAACCCG TTTTCCTCAC CAATGTCACT GATCAAAGCT
  GTGGCTTGCT TCATGTGGTA ATGGTCTTGG CCTAGCTTGG CAATAGTTCT ATGAAAACTG
  GAAGTGGTTC ATCGTGTCCT GCCCAAGTTG TTGAAGTCAC CCATGCATAC CATCCTTGTT
  R
  CCGTGCGTAA TTAGCTGGTG TTCCTCTGTC TATAGCAAGT GGGGGATGCT TGCTCCCAGT
  GGGGCTTCTA TTTCATTCTC TAACTAGCTC TCTACTCATG ACACAACGCA GTCTGGTGGA
  GCTTTGTCTC CGGGTGTCTG TGGTTGGGAT TTTTGATGTC ACCAAGAATC CTTTCTTCTT
  TCCATATGCC ATATTTCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46937108	NES10814021	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30330046					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46937108	NES10814021	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52992475 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42899	predicted gene 42899			within coordinates
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576640	regulatory region 576640			1045 bp distal
Rr576641	regulatory region 576641			1832 bp proximal
Tssr29106	transcription start site region 29106			1439 bp downstream