rs30329053 SNP Detail

Summary

• ID
  rs30329053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53006474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAAGTGCTG AAATTAAAGG CGTGCACCAC CACGACCTAG
  CTTTCTTTTT TTTTTAATTA ATTTTTTTTT TTACTTACTC ATTTTATATC CTACTCCCAG
  R
  TATAAAATGA ATAAGTAAAA AAATTGTGGA GGGGGCTCCC TCCTGGTCAC CCCCTTCCAC
  AATCCTTCCT CCATTCCTCT TCCTCTTCTC CTGGGAGCGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	WSB/EiJ
ss46937399	NES10813112	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	WSB/EiJ
rs30329053					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46937399	NES10813112	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53006474 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C130075A20Rik	RIKEN cDNA C130075A20 gene			within coordinates
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576643	regulatory region 576643			1233 bp proximal