AAGACGCAAC CTGCTTCCAA CAGTTCTGCC CATTTTTCTG TTAGAAATAG CTTGCAATAT ATTCAGGAAG GCACTGTTCA CTCAGAGCAT GTCCCCGGGG CAGGGTCCAT GTCCAGACTG TTTTGTGCCC GTTCTGTCAA CCCGTTTTCC TCACCAATGT CACTGATCAA AGCTGTGGCT TGCTTCATGT GGTAATGGTC Y TGGCCTAGCT TGGCAATAGT TCTATGAAAA CTGGAAGTGG TTCATCGTGT CCTGCCCAAG TTGTTGAAGT CACCCATGCA TACCATCCTT GTTACCGTGC GTAATTAGCT GGTGTTCCTC TGTCTATAGC AAGTGGGGGA TGCTTGCTCC CAGTGGGGCT TCTATTTCAT TCTCTAACTA GCTCTCTACT CATGACACAA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46937099 | NES10814016 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | T | T | T | C |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs30329028 | SNP | T | T | T | T | T | T | C | T | T | T | T | T | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46937099 | NES10814016 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:52992381 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm42899 | predicted gene 42899 | within coordinates | ||||||
Lhfpl6 | LHFPL tetraspan subfamily member 6 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr576640 | regulatory region 576640 | 951 bp distal | ||||||
Rr576641 | regulatory region 576641 | 1926 bp proximal | ||||||
Tssr29106 | transcription start site region 29106 | 1345 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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