rs30325500 SNP Detail

Summary

• ID
  rs30325500
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8929152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCGGGAGCC CGACAGTGGT CAAACCTGAA GGGAAGCTCT
  GGTTGAGGGC AGCCTTCCCT GATGGCCATC TCCAGACCCA GGCCATAACA CTGTCTAACC
  W
  CTCCACCCTA GTCTTCCGAG GGAGGAAGAC TCGAGGCCAC TCGGTAACCT GAGCGCTTCC
  AACCTCACGT GAGAAGAGCT CTACGGGAAG ATAACAATA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45419035	mCV24768637	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss134570707	ENSMUSSNP210990	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320648895	CHEV_3_8864092	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs30325500					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8929152 () rs orientation: forward

Symbol	Name	Function Class
Mrps28	mitochondrial ribosomal protein S28	Intron
Rr406711	regulatory region 406711	963 bp proximal
Rr573330	regulatory region 573330	286 bp distal
Rr573331	regulatory region 573331	236 bp proximal
Rr573332	regulatory region 573332	1381 bp proximal
Tssr32560	transcription start site region 32560	790 bp upstream