rs30325203 SNP Detail

Summary

• ID
  rs30325203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52934901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAGGAAG AACTCGATGA
  TGTCATGGTG AAGTCTGAGA ATAAAGTCTC AAGTTTAACT TGTTTGTTTG TTTTTTTTTC
  TTTTGCTTCA TTTTTCTACT CTCATTTTGT CATCAGCACT TGAATCCTCA CATGAAGAAG
  TGAAATAACA TAGATGTGTG AAATCCAGTA TGCCCTTGGC AGTACAGGTC ACCTCCAGTA
  Y
  AATCACTTCT GCTAGAACTC ATGTGACATG TGACACATGA CACAAGACCT GTGGCTGGAG
  CAGAACTCAT GATGACATGT AAGAACCCCG TGGCTTGGCC CTCGGCTTCT TACTCCTGGC
  ATGACGTCAG TCTGTTGGAA TAAAACCCCT GAGTCTGTTT CCTCTTTGGT GGATGGAAAG
  AATCATTCCG CTTGCCAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46935914	NES10817529	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30325203					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935914	NES10817529	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52934901 () rs orientation: forward

Symbol	Name	Function Class
Rr576621	regulatory region 576621	1316 bp proximal
Rr576622	regulatory region 576622	1654 bp proximal
Rr576623	regulatory region 576623	1737 bp proximal