rs30325132 SNP Detail

Summary

• ID
  rs30325132
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52994778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGTAAAG TGATAAGGTG
  ATAAGTGGAG GTTTATAGGG ATGCCGGACT GTTTTTGTAG CTGGACTCTG GGGCAGTGGG
  GTGGCCTACA GTCTGTCTCC CAGGCTCACC AGTATGCTCC TGCCCCTGCC ATTGTTCCTT
  TGGGGTCTCC AGTAGGAGGG GAGGGGTCCC GATGAGAAGT GTTTTCATTT CCCTTTCTCA
  Y
  TCAGCTCGTG CACAATCTGA AGGTCTAGTT CTTTTCGGGC ACATCAGGGG AGGCATTGTC
  AGGAAGGGGA GGGTGCTGCT GTATCTGTAA CAAGAATATT TAGCTTGGCT AGGGGATCAG
  GCCAGGGTTA GAGTATATTT AGATGTCTAG AGCGCACCTA GACTCCAAGG CTAAGGGTGA
  GGAGTGGGTC AAGCAGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46937162	NES10813751	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30325132					SNP	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46937162	NES10813751	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52994778 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42899	predicted gene 42899			1472 bp downstream
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576641	regulatory region 576641			221 bp distal
Rr576642	regulatory region 576642			within coordinates