rs30324954 SNP Detail

Summary

• ID
  rs30324954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52951343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATAGAATC TCAAAGCAGT
  ATAGAAAATT ATGTTTCATT TGTCTTCTGA TGCTTGGTTG TAATTGGCAT TTGGAGTACA
  AGAAAAAATA GATCTGAAGT GGCCATGGTA AGAGATCCAG CAAAGTCCAA GATTTTTGCC
  AGAATTCTTT TTACAGTGTC AGGGTTCTTC ATGCCTGTTC ATCCTTAAAT ATATGCATCC
  R
  TGGCCTGCTG GGTACAACCT ATGAGACACA AACATGTATG GGCTGTGTGT AACATATGTG
  CTAGGGAGAT AGTTGGTATT TCATAGCATC TTTTTGTCCA ACAGTAGACC CATGGATTGT
  TTTTGCCTTG CTAAACACTT GAGGTCTTTA GAGGCAAAGA CTTCATAGAA AAATGCAAAA
  GGTGTCCGAT TCAATACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46936079	NES10816419	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30324954					SNP	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46936079	NES10816419	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52951343 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13160	CpG island 13160			1827 bp distal
Gm42901	predicted gene 42901			1774 bp upstream
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576628	regulatory region 576628			1785 bp distal
Rr576629	regulatory region 576629			1455 bp distal
Rr576630	regulatory region 576630			1748 bp distal
Rr576631	regulatory region 576631			1446 bp distal
Rr576632	regulatory region 576632			310 bp proximal