rs30324183 SNP Detail

Summary

• ID
  rs30324183
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52994385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATAAACTT ATTATTCATT TAGTTCATTC AGTGCTGTGC
  TAATTCTTCT TGCCAAAGGG GAAAAATAGA TTTATAAGAA ATTCCAGGAA GACTATCTAG
  R
  GACCTAAAAA TAAAAATCCT GGTTTTATTT TAAGCTTGTC AACAGGGGTG ACAAGTGCAA
  GAATTGTAGC CCAGCTGTGC GGGAAGCACC TCATAAATTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46937153	NES10813748	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30324183					SNP	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46937153	NES10813748	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52994385 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42899	predicted gene 42899			1079 bp downstream
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576641	regulatory region 576641			within coordinates
Rr576642	regulatory region 576642			278 bp proximal