rs30324065 SNP Detail

Summary

• ID
  rs30324065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52893918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAAAGGC AAGTATCTCA
  GTCTTAAAAA TATTGTATTT TTAAGAAGAT TATTTGATAT TTAAAGGTGT ATGCATTTCC
  CCTATCCTGG GAGCAGACAC TTACTTCACT GTGGCACTGA GAAGGGAATT CAGCTGTGGC
  ATCAGGAGGT GGTCTGGGGC TGAGAGGTAG CGGTCAAACT GAGCCTGAGA GGAGAGCGGA
  Y
  AAGAGATGTA AGGAAGGCTA CGGAGCTACA AACACCTGCT CCTGGGGAGC GTTAAAACCT
  CAGAAGGTCC CCAGCAAAGC TGTCTAAGGA TGTGTTCAAA AGAGCAGTTC TTAAAACATG
  TTAGTTAACA CCCTAAAACG CCTATATTAA ACACGCATGC ACCAGGGTTT GAAAAGGTTG
  GCAGAATAGA GTGAAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46935305	NES10819781	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30324065					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935305	NES10819781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52893918 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	663 bp downstream
Rr576616	regulatory region 576616	568 bp distal