rs30323911 SNP Detail

Summary

• ID
  rs30323911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52951220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGCTCT CACTGCCCTG
  ATGGGTTGCT GCGTGTCGGA ACTCATCTCC AGGACTGTAG GAAGAGTGGC TGGGGGAATC
  CAGTTCCTGG GGGGTAAGTG ACTTTGCCAA ACTTGAATTG TTTCCATAGA ATCTCAAAGC
  AGTATAGAAA ATTATGTTTC ATTTGTCTTC TGATGCTTGG TTGTAATTGG CATTTGGAGT
  R
  CAAGAAAAAA TAGATCTGAA GTGGCCATGG TAAGAGATCC AGCAAAGTCC AAGATTTTTG
  CCAGAATTCT TTTTACAGTG TCAGGGTTCT TCATGCCTGT TCATCCTTAA ATATATGCAT
  CCGTGGCCTG CTGGGTACAA CCTATGAGAC ACAAACATGT ATGGGCTGTG TGTAACATAT
  GTGCTAGGGA GATAGTTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ
ss46936076	NES10816418	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	G		A
ss135180749	ENSMUSSNP495264	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ
rs30323911					SNP	A	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46936076	NES10816418	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52951220 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13160	CpG island 13160			1704 bp distal
Gm42901	predicted gene 42901			1651 bp upstream
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576628	regulatory region 576628			1662 bp distal
Rr576629	regulatory region 576629			1332 bp distal
Rr576630	regulatory region 576630			1625 bp distal
Rr576631	regulatory region 576631			1323 bp distal
Rr576632	regulatory region 576632			433 bp proximal