TGCCATACTG GCTCTGGGGG TCTCAGCTAG GCAAGCCTGT ATCCTTTGGC ACTTTCCGGA GGTGCTCCTA TCCTGTTCAC GATGAGAGTC GGCAGATGAT GGTGATGGTG GAGGAGTGTG GGCGCTATGC CTCCTTCCAG GGCATCCCCA GCACCGAGTG GAGGATCTGT ACCATAGTGA CAGGCCTTGG CTGCGGCCTG Y TGCTCCTGGT GGCTCTCACT GCCCTGATGG GTTGCTGCGT GTCGGAACTC ATCTCCAGGA CTGTAGGAAG AGTGGCTGGG GGAATCCAGT TCCTGGGGGG TAAGTGACTT TGCCAAACTT GAATTGTTTC CATAGAATCT CAAAGCAGTA TAGAAAATTA TGTTTCATTT GTCTTCTGAT GCTTGGTTGT AATTGGCATT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46936070 | NES10816416 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T |
SNP Consensus Information | |||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
||||
rs30323905 | SNP | T | T | T | T | T | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46936070 | NES10816416 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:52951013 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13160 | CpG island 13160 | 1497 bp distal | ||||||
Gm42901 | predicted gene 42901 | 1444 bp upstream | ||||||
Lhfpl6 | LHFPL tetraspan subfamily member 6 | Coding-Synonymous | ||||||
Intron | ||||||||
Noncoding-Transcript-Variant | ||||||||
Rr576627 | regulatory region 576627 | 1999 bp distal | ||||||
Rr576628 | regulatory region 576628 | 1455 bp distal | ||||||
Rr576629 | regulatory region 576629 | 1125 bp distal | ||||||
Rr576630 | regulatory region 576630 | 1418 bp distal | ||||||
Rr576631 | regulatory region 576631 | 1116 bp distal | ||||||
Rr576632 | regulatory region 576632 | 640 bp proximal | ||||||
Tssr29103 | transcription start site region 29103 | 1957 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 03/18/2025 MGI 6.24 |
![]() |
|