rs30322717 SNP Detail

Summary

• ID
  rs30322717
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121662856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCACTAACT CATCCAATAA CTCTCATATC CAAATGGACA
  GCTCACCTCA GTTTCCTCCT TGAGCCCCAA ACCAGAAACC TATCTGGAAA CCTTTGCAGG
  Y
  ACACACGGAG GTGTGCTTCT ATGATGATTC TAAATCCAGT TAAGTTGAAA ATTGAGATTT
  AATGTTTTTT TTTGTTTGTT TGTTTTTTAA TAACAGGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45418778	mCV22798714	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss320906533	CHEV_3_121572125	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30322717					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121662856 () rs orientation: forward

Symbol	Name	Function Class
Gm65477	predicted gene, 65477	within coordinates
Gm65480	predicted gene, 65480	1908 bp upstream
Rr584187	regulatory region 584187	1418 bp distal
Rr584188	regulatory region 584188	521 bp proximal
Rr584189	regulatory region 584189	1581 bp proximal