rs30322612 SNP Detail

Summary

• ID
  rs30322612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52950886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CAGCTAGGCA AGCCTGTATC CTTTGGCACT TTCCGGAGGT GCTCCTATCC
  Y
  GTTCACGATG AGAGTCGGCA GATGATGGTG ATGGTGGAGG AGTGTGGGCG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46936067	NES10816414	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		C		T	T
ss135180746	ENSMUSSNP4809181	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				T					C
ss320766605	CHEV_3_52847387	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30322612					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46936067	NES10816414	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52950886 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13160	CpG island 13160			1370 bp distal
Gm42901	predicted gene 42901			1317 bp upstream
Lhfpl6	LHFPL tetraspan subfamily member 6			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
Rr576627	regulatory region 576627			1872 bp distal
Rr576628	regulatory region 576628			1328 bp distal
Rr576629	regulatory region 576629			998 bp distal
Rr576630	regulatory region 576630			1291 bp distal
Rr576631	regulatory region 576631			989 bp distal
Rr576632	regulatory region 576632			767 bp proximal
Tssr29102	transcription start site region 29102			1886 bp downstream
Tssr29103	transcription start site region 29103			1830 bp downstream