rs30322610 SNP Detail

Summary

• ID
  rs30322610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52950790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAAACTC TGTTACGGCA
  AGTAGCTACA TACGCCTTGA AGAGCGGTGG ACTACCTGGG AGTTTCTTGT GACTACACGC
  CTTCCTTCAC ACCTTTAGTG CAATCACAGC GGACCCTCAT TGCACTGCCT GTTGGAAGAT
  GGCGTCCAGC CTGACTTGTA CTGGGGTGAT CTGGGCTTTG CTTTCCTTCC TTTCCGCTGC
  Y
  ACCTCCTGTG TGGGGTTCTT CATGCCATAC TGGCTCTGGG GGTCTCAGCT AGGCAAGCCT
  GTATCCTTTG GCACTTTCCG GAGGTGCTCC TATCCTGTTC ACGATGAGAG TCGGCAGATG
  ATGGTGATGG TGGAGGAGTG TGGGCGCTAT GCCTCCTTCC AGGGCATCCC CAGCACCGAG
  TGGAGGATCT GTACCATAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46936064	NES10816413	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30322610					SNP	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46936064	NES10816413	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52950790 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42901	predicted gene 42901			1221 bp upstream
Lhfpl6	LHFPL tetraspan subfamily member 6			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
Rr576626	regulatory region 576626			1931 bp distal
Rr576627	regulatory region 576627			1776 bp distal
Rr576628	regulatory region 576628			1232 bp distal
Rr576629	regulatory region 576629			902 bp distal
Rr576630	regulatory region 576630			1195 bp distal
Rr576631	regulatory region 576631			893 bp distal
Rr576632	regulatory region 576632			863 bp proximal
Tssr29102	transcription start site region 29102			1790 bp downstream
Tssr29103	transcription start site region 29103			1734 bp downstream