rs30322599 SNP Detail

Summary

• ID
  rs30322599
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18435692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTATCAC AGAAGGGCTT
  TTTATTAATT TCTGAACAAT GGCATGATTT GGGTTAGCGA AAGTGCCACA GTTTGTTATG
  ATTTTTTTAA AAGTAATATT TAAAGACCCA TTAAAATGAG AAGATTGACA AAGGGTTTTC
  TGCAAAATAT CCACATTAAG AAAAAAAAAG GGAATTGTTT TAATCTATTA AATGTAACTA
  M
  AGTGCAGGAA AACAGTAATA GGGTGTTTCA AGTCACAGCA CAGAGTTGAA AAAGAACTGT
  TTGGATGAGT ACAGATCAGT GAGAGAACTG GTGCTATTTA AGAAAGGTTC AATGGCTGCA
  AATTATTAGC TGATCTCTGA GGCACACAAT CAGGTTTTAA ATCTCAAGCC GCATAGTTGC
  TAATGGTACT AAATTGCTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45917754	mCV23958678	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
ss133034793	ENSMUSSNP1420544	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs30322599					SNP	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18435692 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			within coordinates
Gm67618	predicted gene, 67618			within coordinates
Rr626922	regulatory region 626922			646 bp distal
Rr626923	regulatory region 626923			930 bp distal
Rr626924	regulatory region 626924			816 bp proximal