rs30322339 SNP Detail

Summary

• ID
  rs30322339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52993513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAAAAAA AAGAACTGGC
  ATGCCATGCT ATGCTCATGG GTGCAACAGT GATACAAAAA TTATAGGAGT AACCAACTCC
  CTTCTGGTAT TATAGATCTA GCCAATAATC CATAGTCAGG GAGCTTATAG CACCCCCACA
  AAAAATAAAG AAAATGTTCA ATTATCTTGG ACTGGGTAGA TTAATCTTTG GGCAAACCTC
  R
  GCAAAAAAGA AAATACTTCT TTCATATAAT TTTAGTCTTC CTGTCAGTTT GTGCAAAACT
  TTTTTTTACA TTATTACTTT TGTGTCATGT GGTGATTGCT TATTTCATCT GGGATCCCTC
  TCTGCCCATC ACTCCTGATC ATAAGAGCTT TGAGTTCATG GCTACTTATT TATTTGCTTC
  CAAGAAAACT GCTCGGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46937129	NES10813739	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30322339					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46937129	NES10813739	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52993513 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42899	predicted gene 42899			207 bp downstream
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576641	regulatory region 576641			794 bp proximal
Rr576642	regulatory region 576642			1150 bp proximal