rs30322241 SNP Detail

Summary

• ID
  rs30322241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119547409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTTACTGT TGGTATTCAT AATGCAGACA GAGACCACAT
  CTGAGGTGAC CATCAGAACA CATCCCTGAA GTGGGAGCCA AGTTCTGGCC ACACCTGTTC
  Y
  GCTGCCATCT TGGTGTCAAT TCCTTCTGGG TGATGGATGC TTTTATACTG TAGTCAGATC
  TGATGTGGAC AACCTGCTTG GGAATAGGGT GAAAAAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45918303	mCV22718043	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss48076635	NES11868062	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	C	T	T		C	C	C	T		C
ss133591136	ENSMUSSNP1793508	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss321928750	CHEV_6_119520466	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30322241					SNP	C	C	C	C	C	T	C	T	C	C	T	T	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076635	NES11868062	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119547409 () rs orientation: forward

Symbol	Name	Function Class
Erc1	ELKS/RAB6-interacting/CAST family member 1	348 bp downstream
Gm44317	predicted gene, 44317	within coordinates
Rr637716	regulatory region 637716	1759 bp proximal