rs30322227 SNP Detail

Summary

• ID
  rs30322227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52892785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCATGCTT TTACTTTTAA
  TAAATATAAA AAAATTTGAA TCTAAAACTA AAATAGCTCT TAAATCATAT ATACACCTCT
  GCATGTTCAT TTGGAAACAC ACGCTTCCCT GTTTCTTAAG TTTCTTACAG AATCTATTCT
  GCTACTGGCA GAGTCCTAAG TCAGGTTACC ATGATGCTCA AGGTGATCAC TGCGTCTGGC
  R
  GCAAAGAGAG TAACATCGTT CTAATTTATC CAAAGGGAAA AGAAAACATC TTTAAAACCA
  TTCATTTTTC TATTTCTCTC CCTATGTTCT AGACTTCTTG GTCCCGTATA AGTATATCTG
  CTTAGTAGTT TCCTTCAAGA CCAAATGTCC AATCAAACTC TCTGTTGAAA GATAAAACTT
  GGGACAAACA AGTTCCAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46935287	NES10819921	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30322227					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935287	NES10819921	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52892785 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	169 bp upstream
Rr576615	regulatory region 576615	1053 bp distal
Rr576616	regulatory region 576616	67 bp proximal