rs30322051 SNP Detail

Summary

• ID
  rs30322051
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124381058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTTTAAG ATACAACACA
  AATTTAGTTA CCAAAAATAA AGTCAGCAAC TTTATATATA AATAAATAGA AAACTGTTTA
  AAGAACAAAA GCCTATGTAA CTTATGACAC CTCCCTGGGT GTGATTGGTA AATCATGTTT
  CAAGAGTATT ACAAGCATTT GTAAAACAGT ACTCAGAAAA AAAAAATCAT TGACCTAAAA
  R
  CACATAAAAT CAAAATGAAA ATTAAGAAAT CAAGGAAAAC ATATAAAAAT TTCCCTTATT
  TTTCTGAGAA TAAGCAGACT ACCAAAGTCA CACAGGAATC TAAGGCAAAA TAAGAACTCA
  GTAAAAAAAT GTTACTTGTA TACATATTTC TGCTGCAGGC TAGAATTCTC CAGAATTCTC
  GTAAAATAAA GATTCCTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45558430	mCV24044406	ABI	CRAMUS_MOUSE	f	SNP		G					A		A
ss46936752	NES10663316	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	G		A	A	A		G	A	A	G		A
ss135790735	ENSMUSSNP589222	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss320929399	CHEV_3_124290327	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30322051					SNP	A	G	A	G	A	G	A	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46936752	NES10663316	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124381058 () rs orientation: forward

Symbol	Name	Function Class
Gm9379	predicted gene 9379	1119 bp downstream
Rr584593	regulatory region 584593	1441 bp distal
Rr584594	regulatory region 584594	206 bp proximal
Rr584595	regulatory region 584595	318 bp proximal