rs30322046 SNP Detail

Summary

• ID
  rs30322046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124380869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTAAAA TCAATGTGAA
  CCCAGGGGAA AACTATAGAA TAAAACCATT AATTGATTGA TAGATTCGTT GATTAGTATA
  TGACCGAGTT TGGGAGCAGA GATGAATTAA GAAAAAGGTT GGTTTAAAAG TTTGCCATAA
  TAAGAAACAG AAGTAAAAGT GTAAAGTGAC AATATTGATG ATAACTGATA CATTTTAAGA
  Y
  ACAACACAAA TTTAGTTACC AAAAATAAAG TCAGCAACTT TATATATAAA TAAATAGAAA
  ACTGTTTAAA GAACAAAAGC CTATGTAACT TATGACACCT CCCTGGGTGT GATTGGTAAA
  TCATGTTTCA AGAGTATTAC AAGCATTTGT AAAACAGTAC TCAGAAAAAA AAAATCATTG
  ACCTAAAAAC ACATAAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46936746	NES10663314	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30322046					SNP	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46936746	NES10663314	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124380869 () rs orientation: forward

Symbol	Name	Function Class
Gm9379	predicted gene 9379	1308 bp downstream
Rr584593	regulatory region 584593	1252 bp distal
Rr584594	regulatory region 584594	395 bp proximal
Rr584595	regulatory region 584595	507 bp proximal