rs30321921 SNP Detail

Summary

• ID
  rs30321921
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52947824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCATGT GACATTTTGA
  AACATGACTT CCCAGCCTTG GCCCTACTCA CACTTCAAGC TAGATGATTC TGGGTGTGCC
  CTGTGTAGTT ACAGAGCAGA CTCCTGGCTT TATGGACTGG CTGCCAGTAG GGCCTTCCCA
  GTCTATGGGT CATGCTTACC CCAAATATCT CCAGACTCTG CCAAATGTCT CCCAGGAACT
  M
  TTCTTTCCTC TTCTCAAGAC TATTGTGATA AACTTAATGT GTATTACATC GCTTTCCTGG
  GAGGCTCATT ACCTGTATCC TATTCCTACA AAGGAAAGGC TTGGAATCAA TCACTTAAAA
  CCTTTCAAAC AATCCTGAAA CAACCTGTCT CCAGCTGATG CCGCCCAATT CAATGGTGCA
  CTCGAAATTT TATTATGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss45487968	mCV23032418	ABI	CRAMUS_MOUSE	f	SNP	A	A	C			A	A
ss46936052	NES10816447	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A			A	A	A	C
ss135180723	ENSMUSSNP2500613	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs30321921					SNP	A	A	C	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46936052	NES10816447	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52947824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13160	CpG island 13160	685 bp proximal
Gm42901	predicted gene 42901	within coordinates
Lhfpl6	LHFPL tetraspan subfamily member 6	1144 bp upstream
Rr576626	regulatory region 576626	232 bp proximal
Rr576627	regulatory region 576627	1036 bp proximal
Rr576628	regulatory region 576628	1191 bp proximal
Rr576629	regulatory region 576629	1735 bp proximal
Rr576630	regulatory region 576630	1750 bp proximal
Tssr29102	transcription start site region 29102	1114 bp upstream
Tssr29103	transcription start site region 29103	1227 bp upstream