rs30321918 SNP Detail

Summary

• ID
  rs30321918
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52947325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTTAAT CATATGCTTA
  CAGGTTAATC AGCTGTTTCT CTGTGAAATG ATAACTGCCT TCGTGGCTTT TCTCTCCCTT
  TTTTTGAGAA TTAGATGAAG TCATCTATTC ATACACCCAG TGTACTGACA CGCAGTAATG
  AAAGAATTTG CAACGGACGC CTCCTTGGCA ATCCATGTCA CTTTCTCAAG CTCCTCTAAG
  S
  TTGAGAAAGT GTCCTAGACT GGATACCCGG TGGGTAGTGT GTGAGTGAGT GTTTGTGTGT
  GGGTGAGTCT GGCTGCCACT GTATAATTTT GTCTAGGCTG GTATCTGCTA CCTCCACATT
  ACATAGATAT GAGATATGTG ATAGCCAGGC GGTGGTATTT AGCTACAAGT CAGACCTGTT
  ATTATATGGC CACCATGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss46936049	NES10816576	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs30321918					SNP	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46936049	NES10816576	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52947325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13160	CpG island 13160	1184 bp proximal
Gm42901	predicted gene 42901	within coordinates
Lhfpl6	LHFPL tetraspan subfamily member 6	1643 bp upstream
Rr576626	regulatory region 576626	731 bp proximal
Rr576627	regulatory region 576627	1535 bp proximal
Rr576628	regulatory region 576628	1690 bp proximal
Tssr29102	transcription start site region 29102	1613 bp upstream
Tssr29103	transcription start site region 29103	1726 bp upstream