CAAACCTGGT CGACATGAAC TGGTGTATGT GAGCTTCTAG ATCAGCTTCA AAGTTAGTAC TGTTTCAGCA CGCTTCCTCC TGCTTAGAGC TCAGACCTCT CTCTACTCGA GGTAGTAAAC GGGGAGAAGA GGAGGATAAG GGCATAAAAT AGATGCGATA CTGAAATGAC AAACTATTAT GTGAAGCGTC ACAGCTTCTG R TCTGAATGGC TTCTCTAAAT ATGTAGAGGT TCATTGAGCT TATGGTCTGA TTCCTGGATT TGATTAATTT CAGTGTGTGA CTTTTTTTTT TCAAGAATTG AAGATTATTG ATATTTTTGC AAACTATTTT TTATCCGACC CAGTAATCAT TTTCAAGAAT AGTTATTAGA ATTGAGAAAA ATAGGGAAGT GGTATTGTGG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46935968 | NES10817344 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | ||
ss320766570 | CHEV_3_52833492 | CHEVERUD | SCREENING_POP | f | SNP | G | A | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs30321685 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46935968 | NES10817344 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:52936991 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr576621 | regulatory region 576621 | 753 bp distal | ||||||
Rr576622 | regulatory region 576622 | 59 bp distal | ||||||
Rr576623 | regulatory region 576623 | 332 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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