rs30321535 SNP Detail

Summary

• ID
  rs30321535
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52892333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTTTCT CTTTTGGGTT
  CACGTTTCCT GTTCCTAAGC AGTCCTGGGT GTTCCTACAG TTCTGGATGG ACTCATGTCT
  TCATGTACGA CGCTCCCAGT CATCCTTCAA AGCAGTGAGT TCTGCTAGGA AGTCAGTGAG
  CTGAGTTCAA GATTAGCATG GTATTTAGTG TGAGCTCAGG ACTCCAACAA CCCATCTTTA
  W
  CCTACTTCCT GGGGTCTCCT GAGCACTGTC CAGGCTATAG TTGCTTTTCT GCAGATAAGT
  TTCCAGAAGT TATTCTATCA TGTTTGCTTT CCTTTACTTA ATTAAGAACT TGTTTAGTTT
  TGTTTATACA GGTTATTTGT TTATACAGAT AATGAATATA GTTGCTAGCT CCAAGAAAAA
  CACACCCCAC TTCCTTCAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46935275	NES10819915	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	A	A	T	T	A		A	A	A	A		T
ss135180524	ENSMUSSNP5688184	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss320766347	CHEV_3_52788834	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30321535					SNP	A	T	A	A	A	A	A	T	T	A	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935275	NES10819915	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52892333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cog6	component of oligomeric golgi complex 6			Coding-Synonymous
				Intron
Gm65168	predicted gene, 65168			within coordinates
Rr397670	regulatory region 397670			621 bp upstream
Rr576615	regulatory region 576615			601 bp distal
Rr576616	regulatory region 576616			519 bp proximal