rs30321012 SNP Detail

Summary

• ID
  rs30321012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52936946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTCTCT TCTAAGTAAG
  GAAGAAAAAA TAGCATTCAC GTTCTCAAAC CTGGTCGACA TGAACTGGTG TATGTGAGCT
  TCTAGATCAG CTTCAAAGTT AGTACTGTTT CAGCACGCTT CCTCCTGCTT AGAGCTCAGA
  CCTCTCTCTA CTCGAGGTAG TAAACGGGGA GAAGAGGAGG ATAAGGGCAT AAAATAGATG
  Y
  GATACTGAAA TGACAAACTA TTATGTGAAG CGTCACAGCT TCTGGTCTGA ATGGCTTCTC
  TAAATATGTA GAGGTTCATT GAGCTTATGG TCTGATTCCT GGATTTGATT AATTTCAGTG
  TGTGACTTTT TTTTTTCAAG AATTGAAGAT TATTGATATT TTTGCAAACT ATTTTTTATC
  CGACCCAGTA ATCATTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46935965	NES10817343	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30321012					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935965	NES10817343	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52936946 () rs orientation: forward

Symbol	Name	Function Class
Rr576621	regulatory region 576621	708 bp distal
Rr576622	regulatory region 576622	14 bp distal
Rr576623	regulatory region 576623	287 bp distal