rs30321009 SNP Detail

Summary

• ID
  rs30321009
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52936861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGATTG AGTCTGTCTT
  TGGCTGAACA CTGAAGTCCT TGATAGACCT GCAAAGTACC CTATCCATTA CTCTTCCTCC
  AGGAAAGATT TCTCTTCTAA GTAAGGAAGA AAAAATAGCA TTCACGTTCT CAAACCTGGT
  CGACATGAAC TGGTGTATGT GAGCTTCTAG ATCAGCTTCA AAGTTAGTAC TGTTTCAGCA
  S
  GCTTCCTCCT GCTTAGAGCT CAGACCTCTC TCTACTCGAG GTAGTAAACG GGGAGAAGAG
  GAGGATAAGG GCATAAAATA GATGCGATAC TGAAATGACA AACTATTATG TGAAGCGTCA
  CAGCTTCTGG TCTGAATGGC TTCTCTAAAT ATGTAGAGGT TCATTGAGCT TATGGTCTGA
  TTCCTGGATT TGATTAATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46935962	NES10817341	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C		G	C	C	G
ss320766568	CHEV_3_52833362	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30321009					SNP	C	C	C	C	C	C	G	C	C	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935962	NES10817341	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52936861 () rs orientation: forward

Symbol	Name	Function Class
Rr576621	regulatory region 576621	623 bp distal
Rr576622	regulatory region 576622	within coordinates
Rr576623	regulatory region 576623	202 bp distal