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rs30321009 SNP Detail
Summary
  • ID
    rs30321009
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:52936861 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAGAGATTG AGTCTGTCTT
    TGGCTGAACA CTGAAGTCCT TGATAGACCT GCAAAGTACC CTATCCATTA CTCTTCCTCC
    AGGAAAGATT TCTCTTCTAA GTAAGGAAGA AAAAATAGCA TTCACGTTCT CAAACCTGGT
    CGACATGAAC TGGTGTATGT GAGCTTCTAG ATCAGCTTCA AAGTTAGTAC TGTTTCAGCA
    S
    GCTTCCTCCT GCTTAGAGCT CAGACCTCTC TCTACTCGAG GTAGTAAACG GGGAGAAGAG
    GAGGATAAGG GCATAAAATA GATGCGATAC TGAAATGACA AACTATTATG TGAAGCGTCA
    CAGCTTCTGG TCTGAATGGC TTCTCTAAAT ATGTAGAGGT TCATTGAGCT TATGGTCTGA
    TTCCTGGATT TGATTAATTT                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
ss46935962 NES10817341 PERLEGEN MM_PANEL2 f SNP C C C C C C G C C C G C C G
ss320766568 CHEV_3_52833362 CHEVERUD SCREENING_POP f SNP C G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
rs30321009 SNP C C C C C C G C C C C G C C G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46935962 NES10817341 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:52936861 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr576621 regulatory region 576621 623 bp distal
Rr576622 regulatory region 576622 within coordinates
Rr576623 regulatory region 576623 202 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory