rs30320686 SNP Detail

Summary

• ID
  rs30320686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52892130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGTCCC TCAGGAGGGA
  TGGATGTTGT ATTTTAGATA GTGTACTTTC CAGGTCTAAG TGCAGCAGGC TGTAACTTCC
  TTCCTTCCTT ATTCTCTCGG TGTACTGATG CTTTCCTTTA GTGCACAGAC ACGTTTCCAA
  GGCTCGCTGT AAATATCTGC TCATGGCACA CACATCAGCT GTGGCTCTGT TTCTATTAAC
  Y
  GATCATTTTT CTCTTTTGGG TTCACGTTTC CTGTTCCTAA GCAGTCCTGG GTGTTCCTAC
  AGTTCTGGAT GGACTCATGT CTTCATGTAC GACGCTCCCA GTCATCCTTC AAAGCAGTGA
  GTTCTGCTAG GAAGTCAGTG AGCTGAGTTC AAGATTAGCA TGGTATTTAG TGTGAGCTCA
  GGACTCCAAC AACCCATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46935266	NES10819909	PERLEGEN	MM_PANEL2	f	SNP		T	C	C	T	T	C		C	C	C		T
ss135180512	ENSMUSSNP361906	ENSEMBL	ENSEMBL_Sanger	f	SNP	C				T
ss320766343	CHEV_3_52788631	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30320686					SNP	C	T	C	C	T	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935266	NES10819909	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52892130 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	824 bp upstream
Rr576615	regulatory region 576615	398 bp distal
Rr576616	regulatory region 576616	722 bp proximal