rs30320471 SNP Detail

Summary

• ID
  rs30320471
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124379675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCATTTT AGTGATTTAT
  TGAAATTCCT GGAGGCTCTA GAACAACAGG AAGAAATAAT ACCCAAAGAG AGTTAAGGTG
  AAGAATAGTC AAATGTGGGC TGAAATCCTT GAAATAGAGG TCTGATGTCC TCTGCTGGAC
  GATGTGGGCA CATGCCCTCA CATGTGGCCA TAATTACCGT CACATCACAT ACACAAATAC
  W
  CATGGTTTGA AATAAATTAA GTATTTTAAA AGTAACTCAT CAATGGAAGC ATAATATAAA
  TTTTCCCAGT CCTTCCCTTT GCCTTGATTT GTATTTCTTA CCCTCTGCCT TACTTGCACT
  GGGAGAAAAA CACCCTCAGA AATGGTTAGA GCCTCCAAAA TGGACTCTGG ACCTCTTTCC
  TATTCGGTCT GTCTAACTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46936731	NES10663380	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	T	A	T	T	T		A	T	T	A		T
ss320929395	CHEV_3_124288944	CHEVERUD	SCREENING_POP	f	SNP										T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30320471					SNP	T	A	T	A	T	A	T	T	T	T	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46936731	NES10663380	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124379675 () rs orientation: forward

Symbol	Name	Function Class
Rr584593	regulatory region 584593	58 bp distal
Rr584594	regulatory region 584594	1589 bp proximal
Rr584595	regulatory region 584595	1701 bp proximal