rs30320270 SNP Detail

Summary

• ID
  rs30320270
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52936775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCCGTCA AATAATGGAA
  ACAAAGTTGA TGAGCTCCTT GAAGTACCAA ACTATACCCC GGAGGCCCCA GCAGGTGTCG
  CTGTTGAGAG AGATTGAGTC TGTCTTTGGC TGAACACTGA AGTCCTTGAT AGACCTGCAA
  AGTACCCTAT CCATTACTCT TCCTCCAGGA AAGATTTCTC TTCTAAGTAA GGAAGAAAAA
  W
  TAGCATTCAC GTTCTCAAAC CTGGTCGACA TGAACTGGTG TATGTGAGCT TCTAGATCAG
  CTTCAAAGTT AGTACTGTTT CAGCACGCTT CCTCCTGCTT AGAGCTCAGA CCTCTCTCTA
  CTCGAGGTAG TAAACGGGGA GAAGAGGAGG ATAAGGGCAT AAAATAGATG CGATACTGAA
  ATGACAAACT ATTATGTGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46935953	NES10817335	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30320270					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935953	NES10817335	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52936775 () rs orientation: forward

Symbol	Name	Function Class
Rr576621	regulatory region 576621	537 bp distal
Rr576622	regulatory region 576622	within coordinates
Rr576623	regulatory region 576623	116 bp distal