rs30320162 SNP Detail

Summary

• ID
  rs30320162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87661761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGA TTGTGGGTGT TGTGTTTGCC
  Y
  TTCCCTCACC ACCACCTCCC AGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45418827	mCV25326281	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss135468077	ENSMUSSNP1081708	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320835358	CHEV_3_87558376	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30320162					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87661761 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13335	CpG island 13335	1409 bp proximal
Pear1	platelet endothelial aggregation receptor 1	Intron
Rr579538	regulatory region 579538	1666 bp proximal
Tssr33951	transcription start site region 33951	1195 bp upstream