rs30319863 SNP Detail

Summary

• ID
  rs30319863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52892096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTGGAG AAACTTCTCG
  CATTAATAAG CCCTGCCTGG TCCCTCAGGA GGGATGGATG TTGTATTTTA GATAGTGTAC
  TTTCCAGGTC TAAGTGCAGC AGGCTGTAAC TTCCTTCCTT CCTTATTCTC TCGGTGTACT
  GATGCTTTCC TTTAGTGCAC AGACACGTTT CCAAGGCTCG CTGTAAATAT CTGCTCATGG
  Y
  ACACACATCA GCTGTGGCTC TGTTTCTATT AACTGATCAT TTTTCTCTTT TGGGTTCACG
  TTTCCTGTTC CTAAGCAGTC CTGGGTGTTC CTACAGTTCT GGATGGACTC ATGTCTTCAT
  GTACGACGCT CCCAGTCATC CTTCAAAGCA GTGAGTTCTG CTAGGAAGTC AGTGAGCTGA
  GTTCAAGATT AGCATGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss46935263	NES10819907	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	C	T		T	T		C
ss135180506	ENSMUSSNP7045360	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C			C
ss320766341	CHEV_3_52788597	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs30319863					SNP	T	T	C	T	T	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935263	NES10819907	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52892096 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	858 bp upstream
Rr576615	regulatory region 576615	364 bp distal
Rr576616	regulatory region 576616	756 bp proximal